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Molecular search is important in chemistry, biology, and informatics for identifying molecular structures within large data sets, improving knowledge discovery and innovation, and making chemical data FAIR (findable, accessible, interoperable, reusable). Search algorithms for polymers are significantly less developed than those for small molecules because polymer search relies on searching by polymer name, which can be challenging because polymer naming is overly broad (i.e., polyethylene), complicated for complex chemical structures, and often does not correspond to official IUPAC conventions. Chemical structure search in polymers is limited to substructures, such as monomers, without awareness of connectivity or topology. This work introduces a novel query language and graph traversal search algorithm for polymers that provides the first search method able to fully capture all of the chemical structures present in polymers. The BigSMARTS query language, an extension of the small-molecule SMARTS language, allows users to write queries that localize monomer and functional group searches to different parts of the polymer, like the middle block of a triblock, the side chain of a graft, and the backbone of a repeat unit. The substructure search algorithm is based on the traversal of graph representations of the generating functions for the stochastic graphs of polymers. Operationally, the algorithm first identifies cycles representing the monomers and then the end groups and finally performs a depth-first search to match entire subgraphs. To validate the algorithm, hundreds of queries were searched against hundreds of target chemistries and topologies from the literature, with approximately 440,000 query–target pairs. This tool provides a detailed algorithm that can be implemented in search engines to provide search results with full matching of the monomer connectivity and polymer topology. 

This work investigates static gel structure and cooperative multi-chain motion in associative networks using a well-defined model system composed of artificial coiled-coil proteins. The combination of small-angle and ultra-small-angle neutron scattering provides evidence for three static length scales irrespective of protein gel design which are attributed to correlations arising from the blob length, inter-junction spacing, and multi-chain density fluctuations. Self-diffusion measurements using forced Rayleigh scattering demonstrate an apparent superdiffusive regime in all gels studied, reflecting a transition between distinct “slow” and “fast” diffusive species. The interconversion between the two diffusive modes occurs on a length scale on the order of the largest correlation length observed by neutron scattering, suggesting a possible caging effect. Comparison of the self-diffusive behavior with characteristic molecular length scales and the single-sticker dissociation time inferred from tracer diffusion measurements supports the primarily single-chain mechanisms of self-diffusion as previously conceptualized. The step size of the slow mode is comparable to the root-mean-square length of the midblock strands, consistent with a single-chain walking mode rather than collective motion of multi-chain aggregates. The transition to the fast mode occurs on a timescale 10–1000 times the single-sticker dissociation time, which is consistent with the onset of single-molecule hopping. Finally, the terminal diffusivity depends exponentially on the number of stickers per chain, further suggesting that long-range diffusion occurs by molecular hopping rather than sticky Rouse motion of larger assemblies. Collectively, the results suggest that diffusion of multi-chain clusters is dominated by the single-chain pictures proposed in previous coarse-grained modeling. 

Defining the similarity between chemical entities is an essential task in polymer informatics, enabling ranking, clustering, and classification. Despite its importance, the pairwise chemical similarity of polymers remains an open problem. Here, a similarity function for polymers with well-defined backbones is designed based on polymers’ stochastic graph representations generated from canonical BigSMILES, a structurally based line notation for describing macromolecules. The stochastic graph representations are separated into three parts: repeat units, end groups, and polymer topology. The earth mover’s distance is utilized to calculate the similarity of the repeat units and end groups, while the graph edit distance is used to calculate the similarity of the topology. These three values can be linearly or nonlinearly combined to yield an overall pairwise chemical similarity score for polymers that is largely consistent with the chemical intuition of expert users and is adjustable based on the relative importance of different chemical features for a given similarity problem. This method gives a reliable solution to quantitatively calculate the pairwise chemical similarity score for polymers and represents a vital step toward building search engines and quantitative design tools for polymer data. 

Small angle neutron scattering was used to measure single chain radii of gyration of end-linked polymer gels before and after cross-linking to calculate the prestrain, which is the ratio of the average chain size in a cross-linked network to that of a free chain in solution. The prestrain increased from 1.06 ± 0.01 to 1.16 ± 0.02 as gel synthesis concentration decreased near the overlap concentration, indicating that the chains are slightly more stretched in the network than in solution. Dilute gels with higher loop fractions were found to be spatially homogeneous. Form factor and volumetric scaling analyses independently confirmed that elastic strands stretch by 2–23% from Gaussian conformations to create a space-spanning network, with increased stretching as network synthesis concentration decreases. Prestrain measurements reported here serve as a point of reference for network theories that rely on this parameter for the calculation of mechanical properties. 

The growth of photochemistry and high throughput experimentation in well plates and flow drives interest in photochemical platforms that provide spatially uniform irradiation of reactions. Here, we present a design of a versatile, uniform light platform for photochemistry to enable increased performance and reproducibility for high throughput experimentation in shallow well plates, in-plane flow reactors, and droplets. The design of the platform is driven by the development of an open-source ray tracing light simulation package. Radiometry provides experimental validation of the system's irradiance and irradiance uniformity. The usefulness of the approach is demonstrated by application to the photoinduced electron transfer–reversible addition–fragmentation chain transfer polymerization of methyl acrylate. 

The linear rheological properties of supramolecular polymer networks formed by mixtures of two different bis-Pd(II) cross-linkers with poly(4-vinylpyridine) in dimethyl sulfoxide are examined. The changes in storage and loss moduli of the networks with mixed cross-linkers are compared to those of samples with a single type of cross-linkers. While the plateau moduli, and presumably network topology, of the networks remain equal regardless of the cross-link distribution, the relaxation time contributed by the faster cross-linkers is increased (by a factor of about 1.5 for the specific samples used in this work) by the presence of the slower cross-linkers, while the reverse influences are not significant. This effect can be explained by the fact that a certain fraction of the elastically effective strands cross-linked with fast cross-linkers is pinned on one end by slow cross-linkers, reducing by half the rate of fast chain relaxation. This effect is anticipated to be general for gels with two well-separated relaxation times.